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Assaf, Rida; Xia, Fangfang; Stevens, Rick Identifying Genomic Islands with Deep Neural Networks BMC Genomics (2021)
Ward, Logan; Dandu, Naveen; Blaiszik, Ben; Narayanan, Badri; Assary, Rajeev; Redfern, Paul; Foster, Ian; Curtiss, Larry Graph-Based Approaches for Predicting Solvation Energy in Multiple Solvents: Open Datasets and Machine Learning Models Journal of Physical Chemistry A (2021)
Long, S. Wesley; Olsen, Randall; Christensen, Paul A. ; Subedi, Sishir ; Olson, Robert; Davis, James; Saavedra, Matthew Ojeda; Yerramilli, Prasanti; Pruitt, Layne; Reppond, Kristina Sequence Analysis of 20,453 Severe Acute Respiratory Syndrome Coronavirus 2 Genomes from the Houston Metropolitan Area Identifies the Emergence and Widespread Distribution of Multiple Isolates of All Major Variants of Concern American Journal of Pathology (2021)
Aytan-Aktug, D; Nguyen, M; Clausen, PTLC; Stevens, RL; Aarestrup, FM; Lund, O; Davis, JJ Predicting antimicrobial resistance using partial genome alignments mSystems (2021)
Seaver, Samuel; Liu, Filipe; Zhang, Qizhi; Jeffryes, James; Faria, Jose; Edirisinghe, Janaka; Mundy, Michael; Chia, Nicholas; Noor, Elad ; Beber, Moritz; Best, Aaron; DeJongh, Matthew; Kimbrel, Jeffrey; Dhaeseleer, Patrik; McCorkle, Sean; Bolton, Jay; Pearson, Erik; Canon, Shane; Wood-Charlson, Elisha; Cottingham, Robert W.; Arkin, Adam; Henry, Christopher The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes Nucleic Acids Research (2021)
Petrie, Ruth; Denvil, Sebastien; Ames, Sasha; Levavasseur, Guillaume; Fiore, Sandro; Allen, Chris; Antonio, Fabrizio; Berger, Katharina; Bretonniere, Pierre-Antoine ; Lacinski, Lukasz; Wagner, Rick Coordinating an operational data distribution network for CMIP6 data Geoscientific Model Development (2021)
Assaf, Rida; Xia, Fangfang; Stevens, Rick Detecting operons in bacterial genomes via visual representation learning Scientific Reports (2021)
Li, Zhozhao ; Chard, Ryan; Ward, Logan; Chard, Kyle; Skluzacek, Tyler J.; Babuji, Yadu; Woodard, Anna; Tuecke, Steven; Blaiszik, Ben; Franklin, Michael J. ; Foster, Ian DLHub: Simplifying Publication, Discovery, and Use of Machine Learning Models in Science Journal of Parallel and Distributed Computing (2021)
Getty, N.; Brettin, T.; Jin, Dong; Stevens, Rick; Xia, F. Deep Medical Image Analysis with Representation Learning and Neuromorphic Computing Interface Focus (2021)