current scientific publications

• Rosofsky, Shawn; Huerta, E. A. Magnetohydrodynamics with physics informed neural operators Machine Learning: Science and Technology (2023)
• Heinken, Almut; Hertel, Johannes; Acharya, Geeta; Ravcheev, Dmitry A.; Nyga, Malgorzata ; Okpala, Onyedika Emmanuel; Hogan, Marcus; Magnusdottir, Stefania; Martinelli, Filippo ; Preciat, German; Edirisinghe, Janaka; Henry, Christopher; Fleming, Ronan M. T.; Thiele, Ines Genome-scale metabolic reconstruction of 7,302 human microorganisms for personalized medicine Nature Biotechnology (2023)
• Nwoye, Chinedu; Alapatt, Deepak; Yu, Tong; Vardazaryan, Armine; Xia, Fangfang; Zhao, Zixuan; Xia, Tong; Jia, Fucang; Yang, Yuxuan; Wang, Hao; Duan, Xiaotian; Getty, Neil Cholectriplet2021: A benchmark challenge for surgical action triplet recognition Medical Image Analysis (2023)
• Clyde, Austin; Liu, Xuefeng; Brettin, Thomas; Yoo, Hyunseung; Partin, Alexander; Babuji, Yadu; Blaiszik, Ben; Mohd-Yusof, Jamaludin; Merzky, Andre; Turilli, Matteo; Jha, Shantenu; Ramanathan, Arvind; Stevens, Rick AIaccelerated proteinligand docking for SARSCoV2 is 100fold faster with no significant change in detection Scientific Reports (2023)
• Shaffer, Michael ; Borton, Mikayla A. ; Bolduc, Ben ; Faria, Jose; Flynn, Rory M. ; Ghadermazi, Parsa; Edirisinghe, Janaka; Wood-Charlson, Elisha; Miller, Christopher S. ; Chan, Siu Hung Joshua; Sullivan, Matt B. ; Henry, Christopher; Wrighton, Kelly C. kb_DRAM: annotation and metabolic profiling of genomes with DRAM in KBase Bioinformatics (2023)
• Shaffer, Michael ; Borton, Mikayla A. ; Bolduc, Ben ; Faria, Jose; Flynn, Rory M. ; Ghadermazi, Parsa; Edirisinghe, Janaka; Wood-Charlson, Elisha M.; Miller, Christopher; Henry, Christopher kb_DRAM: annotation and metabolic profiling of genomes with DRAM in KBase Bioinformatics (2023)
• Eisenmann, Matthias; Reinke, Annika; Weru, V.; Tizabi, M. D.; Isensee, F.; Adler, T. J.; Ali, S.; Andrearczyk, V.; Aubreville, M.; Baid, U.; Xia, Fangfang Why is the winner the best? (2023)
• Sivaraman, Ganesh; Csanyi, Gabor ; Vazquez-Mayagoitia, Alvaro; Foster, Ian; WIlke, Stephen; Weber, Richard; Benmore, Chris A combined machine learning and high-energy x-ray diffraction approach to understanding liquid and amorphous metal oxides Journal of the Physical Society of Japan (2022)
• Hidayetoglu, Mert; Bicer, Tekin; Garcia de Gonzalo, Simon; Ren, Bin; Gursoy, Doga; Kettimuthu, Rajkumar; Foster, Ian; W. Hwu, Wen-mei MemXCT: Design, Optimization, Scaling, and Reproducibility IEEE Transactions on Parallel and Distributed Systems (2022)
• Crystal-Ornelas, Robert; Varadharajan, Charuleka; O'Ryan, Dylan; Beilsmith, Kathleen; Bond-Lamberty, Ben; Boye, Kristin; Burrus, Madison; Cholia, Shreyas; Christianson, Danielle; Crow, Michael; Weisenhorn, Pamela Enabling FAIR data in Earth and environmental science with community-centric (meta)data reporting formats Scientific Data (2022)