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Reference | Publication | Biosciences Division

BIO 2010 Publications

Minh, DavidOptimized replica gas estimation of absolute integrals and partition functions.Physical Review E: Statistical, Nonlinear, and Soft Matter Physics(2010)

Jin, Qiaoling; Duggan, R; Dasa, Siva; Li, F; Chen, LiaohaiRandom mitotic activities across human embryonic stem cell colonies.Stem cells(2010)

Pokkuluri, Phani; Londer, Yuri; Yang, X; Duke, Norma; Erickson, Jill; Orshonsky, Valerie; Johnson, George; Schiffer, MarianneStructural characterization of a family of cytochromes c{sub 7} involved in Fe(III) respiration by Geobacter sulfurreducens.Biochimica et Biophysica Acta. Bioenergetics(2010)

Larsen, Peter; Trivedi, G; Sreedasyam, A; Lu, Vincent; Podila, G; Collart, FrankUsing deep RNA sequencing for the structural annotation of the laccaria bicolor mycorrhizal transcriptome.PLOS ONE(2010)

Finney, Lydia; Chishti, Yasmin; Khare, Tripti; Giometti, Carol; Levina, Aviva; Lay, Peter; Vogt, StefanImaging metals in proteins by combining electrophoresis with rapid x-ray fluorescence mapping.ACS Chemical Biology(2010)

Binkowski, Thomas; Cuff, Marianne; Nocek, Boguslaw; Chang, Changsoo; Joachimiak, AndrzejAssisted assignment of ligands corresponding to unknown electron density.Journal of Structural and Functional Genomics(2010)

Kim, Youngchang; Zhou, Min; Moy, Shiu; Morales, Jennifer; Joachimiak, AndrzejHigh-resolution structure of the nitrile reductase QueF combined with molecular simulations provide insight into enzyme mechanism.Journal of Molecular Biology(2010)

Ashino, Takashi; Varadarajan, Sudhahar; Urao, N; Oshikawa, J; Chen, G; Wang, H; Huo, Yanwu; Finney, Lydia; Vogt, Stefan; McKinney, Ronald; Maryon, E; Kaplan, J; Ushio-Fukai, M; Fukai, TohruUnexpected role of the copper transporter ATP7A in PDGF-induced vascular smoothCirculation Research(2010)

Jensen, Larry; Sanishvili, Ruslan; Davidson, Victor; Wilmot, CarolineIn crystallo posttranslational modification within a MauG/pre-methylamine dehydrogenase complex.Science(2010)

Petrova, Tatiana; Ginell, Stephan; Mitschler, Andre; Kim, Youngchang; Joachimiak, Grazyna; Cousido-Siah, A; Hazemann, I; Podjarny, Alberto; Lazarski, Krzysztof; Joachimiak, AndrzejX-ray-induced deterioration of disulfide bridges at atomic resolution.Acta Crystallographica. Section D(2010)

O'Brien, Sarah; Jastrow, Julie; Grimley, D; Gonzalez-Meler, MiguelMoisture and vegetation controls on decadal-scale accrual of soil organic carbon and total nitrogen in restored grasslands.Global Change Biology(2010)

Fletcher, Kendra; Boyanov, Maxim; Thomas, S; Wu, Qingliu; Kemner, Kenneth; Loffler, FU(VI) reduction to mononuclear U(VI) by desulfitobacterium spp.Environmental Science and Technology(2010)

Chang, Changsoo; Tesar, Christine; Gu, Minyi; Babnigg, Gyorgy; Joachimiak, Andrzej; Pokkuluri, Phani; Szurmant, H; Schiffer, MarianneExtracytoplasmic pas-like domains are common in signal transduction proteins. Journal of Bacteriology(2010)

O'Loughlin, Edward; Gorski, C; Scherer, M; Boyanov, Maxim; Kemner, KennethEffects of oxyanions, natural organic matter, and bacterial cell numbers on the bioreduction of lepidocrocite ({gamma}-FeOOH) and the formation of secondary mineralization products.Environmental Science and Technology(2010)

Kemner, Kenneth; Boyanov, Maxim; Eng, Peter; Fenter, Paul; Heald, Steve; Lai, Barry; Lee, S; Scheckel, Kirk; Skanthakumar, Suntharalingam; Sutton, Stephen; Wilson, RichardEnvironmental research at the Advanced Photon Source.Synchrotron Radiation News(2010)

Chaulk, S; Lu, J; Tan, Kemin; Arthur, D; Edwards, R; Frost, Leonard; Joachimiak, Andrzej; Glover, JeanN. meningitidis 1681 is a member of the FinO family of RNA chaperones.RNA(2010)

Tchigvintsev, A; Xu, X; Singer, A; Chang, Changsoo; Brown, G; Proudfoot, M; Cui, Honggang; Flick, R; Anderson, W; Joachimiak, Andrzej; Galperin, M; Savchenko, Alexei; Yakunin, AStructural Insight into the Mechanism of c-di-GMP hydrolysis by EAL domain phosphodiesterases.Journal of Molecular Biology(2010)

Finney, Lydia; Vogt, Stefan; Wolford, Janet; Chishti, Yasmin; Jin, Q; Ward, Jesse; Chen, LiaohaiLoss of pluripotency in human embryonic stem cells directly correlates with an increase in nuclear zinc.PLOS ONE(2010)

Kelly, Shelly; Wu, W; Yang, F; Criddle, C; Marsh, Tamara; O'Loughlin, Edward; Ravel, Bruce; Watson, Demetrius; Jardine, P; Kemner, KennethUranium transformations in static microcosms.Environmental Science and Technology(2010)

Cymborowski, Marcin; Klimecka, Maria; Chruszcz, Maksymilian; Zimmerman, M; Shumilin, Igor; Borek, Dominika; Lazarski, Krzysztof; Joachimiak, Andrzej; Otwinowski, Zbyszek; Anderson, W; Minor, WladyslawTo automate or not to automate : this is the question.Journal of Structural and Functional Genomics(2010)

O'Loughlin, Edward; Kelly, Shelly; Kemner, KennethXAFS investigation of the interactions of uranium (VI) with secondary mineralization products from the bioreduction of iron (III) oxides.Environmental Science and Technology(2010)

Schiffer, Marianne; Chang, Changsoo; Tesar, Christine; Gu, Minyi; Babnigg, Gyorgy; Joachimiak, Andrzej; Pokkuluri, Phani; Szurmant, HExtracytoplasmic PAS-like domains are common in signal transduction proteins.Journal of Bacteriology(2010)

Mishra, Bhoopesh; Boyanov, Maxim; Bunker, Bruce; Kelly, Shelly; Kemner, Kenneth; Fein, JeremyHigh-and low-affinity binding sites for Cd on the bacterial cell walls of Bacillus subtilis and Shewanella oneidensis.Geochimica et Cosmochimica Acta(2010)

Jiang, Wei; Roux, BFree Energy Perturbation Hamiltonian Replica-Exchange Molecular Dynamics (FEP\H-REMD) for absolute ligand binding free energy calculations.Journal of Chemical Theory and Computation(2010)

Tan, Kemin; Tesar, Christine; Wilton, R; Keigher, Laura; Babnigg, Gyorgy; Joachimiak, AndrzejNovel {alpha}-glucosidase from human gut microbiome : substrate specificities and their switch.The FASEB Journal(2010)

Finfrock, Y; Stern, Edward; Yacoby, Yizhak; Alkire, Randy; Evans-Lutterodt, Kenneth; Stein, A; Isakovic, Abdel; Kas, J; Joachimiak, AndrzejSpatial dependence and mitigation of radiation damage by a line-focus mini-beam.Acta Crystallographica. Section D(2010)