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Reference | Reference | Biosciences

BIO 2023 Publications

Cupil-Garcia, Vanessa; Li, Joy; Norton, Stephen; Odion, Ren; Strobbia, Pietro; Menozzi, Luca; Ma, Chenshuo; Hu, Jianhong; Zentella, Rodolfo; Boyanov, Maxim; Finfrock, Zou; Gursoy, Doga; Sholto-Douglas, Deirdre; Yao, Junjie; Sun, Tai-Ping; Kemner, Kenneth; Vo-Dinh, Tuan Plasmonic nanorod probes journey inside plant cells for in vivo SERS sensing and multimodal imaging Nanoscale (2023)

DiPuma, Thomas; Thabthimthong, Teerana; Kelley, Emma; Konczak, Katherine; Beulke, Megan; Herbert, Claire; Habeeb Mohammad, Thanhani; Starus, Anna; Nocek, Boguslaw; Olsen, Kenneth; Holz, Richard C. ; Becker, Daniel; Bulaon, Paula Tetrazole-based inhibitors of the bacterial enzyme N-succinyl-L, L-2,6-diaminopimelic acid desuccinylase as potential antibiotics Bioorganic and Medicinal Chemistry Letters (2023)

Bilbao, Aivett; Munoz, Nathalie; Kim, Joonhoon; Orton, Daniel; Gao, Yuqian; Poorey, Kunal; Pomraning, Kyle ; Weitz, Karl; Nicora, Carrie; Burnet, Meagan; Wilton, Rosemarie PeakDecoder enables machine learning-based metabolite annotation and accurate profiling in multidimensional mass spectrometry measurements Nature Methods (2023)

Zhao, Jun; Chakrabarti, Seemanti; Chambers, Randolph; Weisenhorn, Pamela; Travieso, Rafael; Stumpf, Sandro; Standen, Emily; Briceno, Henry; Troxler, Tiffany; Gaiser, Evelyn; Kominoski, John; Dhillon, Braham; Martens-Habbena, Willm Year-around survey and manipulation experiments reveal differential sensitivities of soil prokaryotic and fungal communities to saltwater intrusion in Florida Everglades wetlands Science of The Total Environment (2023)

Martin, Hector; Radivojevic, Tijana; Zucker, Jeremy; Bouchard, Kristofer; Sustarich, Jess; Peisert, Sean; Arnold, Dan; Hillson, Nathan; Babnigg, Gyorgy; Marti, Jose; Mungall, Christopher; Beckham, Gregg; Waldburger, Lucas; Carothers, James; Sundaram, ShivShankar; Agarwal, Deb; Simmons, Blake; Backman, Tyler; Banerjee, Deepanwita; Tanjore, Deepti; Singh, Anup Perspectives for self-driving labs in synthetic biology Current Opinion in Biotechnology (2023)

Feng, Shuchen; Owens, Sarah; Shrestha, Abhilasha; Poretsky, Rachel; Hartmann, Erica; Wells, George Intensity of sample processing methods impacts wastewater SARS-CoV-2 whole genome amplicon sequencing outcomes Science of The Total Environment (2023)

Hampton-Marcell, Jarrad; Ghosh, Aritra; Jafari Gukeh, Mohamad; Megaridis, Constantine A new approach of microbiome monitoring in the built environment: feasibility analysis of condensation capture Microbiome (2023)

Arvans, Donna; Chang, Changsoo; Alshaikh, Altayeb; Tesar, Christine; Babnigg, Gyorgy; Wolfgeher, Don; Kron, Stephen; Antonopoulos, Dionysios; Bashir, Mohamed; Cham, Candace; Musch, Mark; Chang, Eugene; Joachimiak, Andrzej; Hassan, Hatim Sel1-like proteins and peptides are the major Oxalobacter formigenes-derived factors stimulating oxalate transport by human intestinal epithelial cells American Journal of Physiology-Cell Physiology (2023)

Dewey, Jeffrey A; Delalande, Clémence; Azizi, Saara-Anne; Lu, Vivian; Antonopoulos, Dionysios; Babnigg, Gyorgy Molecular glue discovery: current and future approaches Journal of Medicinal Chemistry (2023)

Kaplan, Daniel I; Smith, Ronald J; Parker, Connor J; Roberts, Kimberly A; Hazenberg, Pieter; Morales, Juan; O'Loughlin, Edward J; Boyanov, Maxim I; Weisenhorn, Pamela; Kemner, Kenneth M; Powell, Brian A Natural attenuation of uranium in a fluvial Wetland: Importance of hydrology and speciation Applied Geochemistry (2023)

Hanke, Paul; Parrello, Bruce; Vasieva, Olga; Akins, Chase; Chlenski, Philippe; Babnigg, Gyorgy; Henry, Chris; Foflonker, Fatima; Brettin, Thomas; Antonopoulos, Dionysios; Stevens, Rick; Fonstein, Michael Engineering of increased L-Threonine production in bacteria by combinatorial cloning and machine learning Metabolic Engineering Communications (2023)

Wildenberg, Gregg; Li, Hanyu; Sampathkumar, Vandana; Sorokina, Anastasia; Kasthuri, Narayanan Isochronic development of cortical synapses in primates and mice Nature Communcations (2023)

Zhang, Yidan; O'Loughlin, Edward J; Park, Su-Young; Kwon, Man Jae Effects of Fe (III)(hydr) oxide mineralogy on the development of microbial communities originating from soil, surface water, groundwater, and aerosols Science of the Total Environment (2023)