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Reference | Publication | Biosciences Division

BIO 2017 Publications

Alkire, Randall Approximating the near-edge mass absorption coefficients for Ni using an ultra-thin bi-metal foilJournal of Applied Crystallography(2017)

Wu, R; Wilton, R; Endres, M.; Babnigg, G.; Joachimiak, A.; Schiffer, M.; Pokkuluri, P. R. A novel signal transduction protein: combination of solute binding and tandem PAS-like sensor domains in one polypeptide chainProtein Science(2017)

Zerbs, Sarah; Korajczyk, Peter; Noirot, Philippe; Collart, FrankTransport capabilities of environmental pseudomonads for sulfur compoundsProtein Science(2017)

Shinde, Shalaka; Cumming, Jonathan; Collart, Frank; Noirot, Philippe; Larsen, Peter Pseudomonas fluorescens Transportome is Linked to Strain-Specific Plant Growth Promotion in Aspen Seedlings Under Nutrient Stress Frontiers in Plant Science(2017)

Batot, Gaelle; Michalska, Karolina; Ekberg, Greg; Irimpan, Ervin; Joachimiak, Grazyna; Jedrzejczak, Robert; Babnigg, Gyorgy; Hayes, Christopher; Joachimiak, Andrzej; Goulding, CeliaThe CDI toxin of Yersinia kristensenii is a novel bacterial member of the RNase A superfamilyNucleic Acids Research(2017)

Wellington, Samantha ; Nag, Partha; Michalska, Karolina; Johnston, Stephen; Jedrzejczak, Robert; Kaushik, Virendar; Clatworthy, Anne; Siddiqi, Noman; McCarren, Patrick; Bajrami, Besnik; Maltseva, Natalia; Combs, Senya; Fisher, Stewart; Joachimiak, Andrzej; Schreiber, Stuart; Hung, DeborahA small-molecule allosteric inhibitor of Mycobacterium tuberculosis tryptophan synthaseNature Chemical Biology(2017)

Herrou, Julien; Willett, Jonathan; Czyz, Daniel; Babnigg, Gyorgy; Kim, Youngchang; Crosson, SeanConserved ABC Transport System Regulated by the General Stress Response Pathways of Alpha- and GammaproteobacteriaJournal of Bacteriology(2017)

Lee, Jungsoon; Sung, Nuri; Mercado, Jonathan; Hryc, Corey; Chang, Changsoo; Lee, Sukyeong; Tsai, FrancisOverlapping and Specific Functions of the Hsp104 N Domain Define Its Role in Protein DisaggregationScientific Reports(2017)

Michalska, Karolina; Gucinski, Grant ; Garza-Sanchez, Fernando; Johnson, Parker; Stols, Lucy; Eschenfeldt, William; Babnigg, Gyorgy; Low, David; Goulding, Celia; Joachimiak, Andrzej; Hayes, ChristopherStructure of a novel antibacterial toxin that exploits elongation factor Tu to cleave specific transfer RNAsNucleic Acids Research(2017)

Kim, Youngchang; Chhor, Gekleng; Ching-Sung, Tsai; Fox, Gabriel; Chen, Chia-Sui; Winans, Nathan; Jedrzejczak, Robert; Joachimiak, Andrzej; stephen, winansX-ray crystal structures of the pheromone-binding domains of two quorum-hindered transcription factors, YenR of Yersinia enterocolitica and CepR2 of Burkholderia cenocepaciaProteins(2017)

Popovic, Ana; Hai, Tran; Tchigvintsev, Anatoly; Hajighasemi, Mahbod; Nocek, Boguslaw; khusnutdinova, Anna; Brown, Greg; Glinos, Julia; Flick, Robert; Skarina, Tatiana; Joachimiak, AndrzejActivity screening of environmental metagenomic libraries reveals novel carboxylesterase familiesScientific Reports(2017)

Juarez-Vazquez, Ana; Edirisinghe, Janaka; Ernesto, Verduzco-Castro; Michalska, Karolina; Wu, Chenggang; Noda-Garcia, Lianet; Babnigg, Gyorgy; Endres, Michael; Medina-Ruiz, Sofia; Santoyo-Flores, Julian; Carrillo-Tripp, Mauricio; Ton-That, Hung; Joachimiak, Andrzej; Henry, Christopher; Barona-Gomez, FranciscoEvolution of substrate specificity in a retained enzyme driven by gene losseLife(2017)

Annaval, Thibault; Rudolf, Jeffey; Chang, Chin-Yuan; Lohman, Jeremy; Kim, Youngchang; Bigelow, Lance; Jedrzejczak, Robert; Babnigg, Gyorgy; Joachimiak, Andrzej; Phillips, George; Shen, BCrystal Structure of Thioesterase SgcE10 Supporting Common Polyene Intermediates in 9- and 10-Membered Enediyne Core BiosynthesisACS Omega(2017)

Forlani, Giuseppe; Nocek, Boguslaw; Chakravarthy, Srinivas; Joachimiak, AndrzejFunctional Characterization of Four Putative d1-Pyrroline-5-Carboxylate Reductases from Bacillus subtilisFrontiers in microbiology(2017)

Dai, Shuyan; Sun, Cancan; Tan, Kemin; Ye, Sheng; Zhang, RongguangStructure of thrombospondin type 3 repeats in bacterial outer membrane protein A reveals its intra-repeat disulfide bond-dependent calcium-binding capabilityCell Calcium(2017)

Tan, Kemin; Deatherage Kaiser, Brook; Wu, Ruiying; Cuff, Marianne; Fan, Yao; Bigelow, Lance; Jedrzejczak, Robert; Adkins, Joshua; Cort, John; Babnigg, Gyorgy; Joachimiak, AndrzejInsights into PG-Binding, Conformational Change, and Dimerization of the OmpA C-terminal Domains from Salmonella enterica serovar Typhimurium and Borrelia burgdorferiProtein Science(2017)

Stagno, J. R. ; Liu, Y.; Bhandari, Y. R. ; Conrad, C. E. ; Panja, S. ; Swain, M. ; Fan, L. ; Nelson, G.; Li, C.; Wendel, D. R.; White, T. A. ; Coe, J. D. ; Wiedorn, M. O. ; Tuckey, R. A. ; Yu, P. ; Dyba, M. ; Tarasov, S. G. ; Weierstall, U.; Grant, T. D. ; Schwieters, C. D. ; Zhang, J. ; Ferre-D'Amare, AR ; Fromme, P.; Draper, D. E. ; Liang, M. ; Hunter, M. S. ; Boutet, S. ; Tan, K. ; Zuo, X. ; Ji, X. ; Barty, A. ; Zatsepin, N. A. ; Chapman, H. N. ; Spence, J. C. H. ; Woodson, S. A. ; Wang, Y.-X. Structures of riboswitch RNA reaction states by mix-and-inject XFEL serial crystallographyNature(2017)

Kwon, Man Jae; Boyanov, Maxim; Yang, Jung-Seok; Lee, Seunghak; Hwang, Yun Ho; Lee, Juyeon; Mishra, Bhoopesh; Kemner, KennethTransformation of zinc-concentrate in surface and subsurface environments: Implications for assessing zinc mobility/toxicity and choosing an optimal remediation strategyEnvironmental Pollution(2017)

Sonny, Lee; Kahn, Stacy; Delmont, Tom; Shaiber, Alon; Esen, Ozcan; Hubert, Nathaniel; Morrison, Hilary; Antonopoulos, Dionysios; Rubin, David; Eren, A.High-resolution tracking of microbial colonization in Fecal Microbiota Transplantation experiments via metagenome-assembled genomes Microbiome (2017)

Huang, Yong; Dalal, Sushila; Antonopoulos, Dionysios; Hubert, Nathaniel; Raffals, Laura; Dolan, Kyle; Weber, Christopher; Messer, Jeanette; Jabri, Bana; Bendelac, Albert; Eren, A.; Rubin, David; Sogin, Mitch; Chang, Eugene Early transcriptomic changes in the ileal pouch provide insight into the molecular pathogenesis of pouchitis and ulcerative colitis Inflammatory Bowel Diseases (2017)

Touw, Ketrija; Ringus, Daina; Hubert, Nathaniel; Wang, Yunwei; Leone, Vanessa; Nadimpalli, Anuradha; Theriault, Betty; Huang, Yong; Tune, Jonathan; Herring, Paul; Farrugia, Gianrico; Kashyap, Purna; Antonopoulos, Dionysios; Chang, EugeneMutual reinforcement of pathophysiological host-microbe interactions that maintain steady state conditions of diseasePhysiological Reports (2017)

Faries, Kaitlyn; Dylla, Nicholas; Hanson, Deborah; Holten, Dewey; Laible, Philip; Kirmaier, ChristineManipulating the Energetics and Rates of Electron Transfer in Rhodobacter capsulatus Reaction Centers with Asymmetric Pigment ContentJournal of Physical Chemistry B(2017)