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Reference | Publication | Mathematics and Computer Science Division

MCS 2011 Publications

F. You, Tao, L., Graziano, D. J., and Snyder, S., “Optimal Design of Sustainable Cellulosic Biofuel Supply Chains: Multiobjective Optimization Coupled with Life Cycle Assessment and Input-Output Analysis”, AIChE Journal, 2011.

V. M. Zavalaand Anitescu, M., “On the Dynamic Stability of Electricity Markets”, 2011.

D. - H. Kim, Larson, J. W., and Chiu, K., “Toward Malleable Model Coupling”, in Procedia Computer Science, Singapore, 2011.

J. W. Larson, “Visualizing Process Composition and Load Balance in Parallel Coupled Models”, in Procedia Computer Science, Singapore, 2011.

K. C. Uga, Min, M. S., Lee, T., and Fischer, P. F., “Spectral-Element Discontinuous Galerkin Lattice Boltzmann Simulation of Flow Past Two Cylinders in Tandem with an Exponential Time Integrator”, Computers and Mathematics with Applications, 2011.

M. S. Minand Fischer, P. F., “An Efficient High-Order Time Integration Method for Spectral-Element Discontinuous Galerkin Simulations in Electromagnetics”, 2011.

F. You, Pinto, J. M., Grossmann, I. E., and Megan, L., “Optimal Distribution-Inventory Planning of Industrial Gases: II. MINLP Models and Algorithms for Stochastic Cases”, Ind. Eng. Chem. Res., vol. 50, no. 5, pp. 2928-2925, 2011.

O. Roderick, Wang, Z., and Anitescu, M., “Dimensionality Reduction for Uncertainty Quantification of Nuclear Engineering Models”, Trans. Am. Nucl. Soc. , vol. 104, 2011.

J. W. Larson, Briggs, P. R., and Tobis, M., “Block-Entropy Analysis of Climate Data”, in Procedia Computer Science, 2011.

J. Bresnahan, Link, M., Kettimuthu, R., and Foster, I. T., “Managed GridFTP”, in Proc. 2011 IEEE International Symposium on Parallel and Distributed Processing Workshops and PhD Forum, 2011.

S. H. K. Narayanan, Norris, B., Hovland, P. D., Nguyen, D. C., and Gebremedhin, A. H., “Sparse Jacobian Computation Using ADIC2 and ColPack”, in Procedia Computer Science, Singapore, 2011.

F. Youand Grossmann, I. E., “Multicut Benders Decomposition Algorithm for Process Supply Chain Planning under Uncertainty”, 2011.

V. M. Zavalaand Anitescu, M., “New Insights into the Dynamic Stability of Wholesale Electricity Markets”, presented at the 02/2011, 2011.

H. - J. Kimand Tautges, T. J., “EBMesh: An Embedded Boundary Meshing Tool”, in Proceedings of the 19th International Meshing Roundtable, Chattanooga, Tenn., 2011.

Z. Zhongand You, F., “Oil Spill Response Planning with Consideration of Physicochemical Evolution of the Oil Slick: A Multiobjective Optimization Approach”, Computers & Chem. Engrg., vol. 35, pp. 1614-1630, 2011.

S. Leyfferand Mahajan, A., “Foundations of Constrained Optimization”, in Wiley Encyclopedia of Operations Research and Management Science, John Wiley and Sons, Inc., 2011.

S. Leyfferand Mahajan, A., “Software for Nonlinearly Constrained Optimization”, in Wiley Encyclopedia of Operations Research and Managment Science, Wiley, 2011.

J. Bresnahan, LaBissoniere, D., Freeman, T., and Keahey, K., “Cumulus: An Open Source Storage Cloud for Science”, in 2nd Workshop on Scientific Cloud Computing (ScienceCloud 2011) , San Jose, CA , 2011.

J. Cope, Liu, N., Lang, S., Carothers, C. D., and Ross, R. B., “CODES: Enabling Co-Design of Multi-Layer Exascale Storage Architectures”, in Workshop on Emerging Supercomputing Technologies 2011 (WEST 2011) , Tuscon, AZ , 2011.

T. D. Uram, Papka, M. E., Hereld, M., and Wilde, M., “A Solution Looking for Lots of Problems: Generic Portals for Science Infrastructure”, in TeraGrid 2011, Salt Lake City, UT, 2011.

A. G. Cioaca, Zavala, V. M., and Constantinescu, E. M., “Adjoint Sensitivity Analysis for Numerical Weather Prediction: Applications to Power Grid Optimizationlass Systems”, in First International Wokshop on High Performance Computing, Networking, and Analytics for the Power Grid,, Seattle, Washington, 2011, pp. 35-42.

F. Isaila, J. Blas, G., Carretero, J., Latham, R., and Ross, R. B., “Design and Evaluation of Multiple-Level Data Staging for Blue Gene Systems”, IEEE Transactions on Parallel and Distributed Systems, vol. 22, no. 6, 2011.

H. F. Stripling, Anitescu, M., and Adams, M. L., “A Generalized Adjoint Framework for Sensitivity and Global Error Estimation in Time-Dependent Nuclear Reactor Simulations”, Annals of Nuclear Energy, vol. 52, pp. 47-58, 2011.

C. G. Petraand Anitescu, M., “A Preconditioning Technique for Schur Complement Systems Arising in Stochastic Optimization”, Computational Optimization and Applications, pp. 1-30, 2011.

J. A. Gilbert, Bailey, M., Field, D., Fierer, N., Fuhrman, J. A., Hu, B., Jansson, J., Knight, R., Kowalchuk, G. A., Kyrpides, N., Meyer, F., and Stevens, R. L., “The Earth Microbiome Project: The Meeting Report for the 1st International Earth Mircrobiome Project Conference”, Standards in Genomic Sciences, vol. 5, no. 2, 2011.

M. Wilde, Hategan, M., Wozniak, J. M., Clifford, B., Katz, D. S., and Foster, I. T., “Swift: A Language for Distributed Parallel Scripting”, Parallel Computing, vol. 37, no. 9, pp. 633-652, 2011.

K. Yoshii, Iskra, K., Naik, H., Beckman, P. H., and Broekema, P. C., “Performance and Scalability Evaluation of 'Big Memory' on Blue Gene Linux”, International Journal of High Performance Computing Applications, vol. 25, no. 2, 2011.

M. Anitescu, Zeng, X., and Constantinescu, E. M., “A Low-Memory Approach for Best-State Estimation of Hidden Markov Models with Model Error”, SIAM Journal on Numerical Analysis, 2011.

J. Chen, Anitescu, M., and Saad, Y., “Computing f(A)b via Least Squares Polynomial Approximations”, SIAM Journal on Scientific Computing, vol. 33, no. 1, pp. 195-222, 2011.

I. Safroand Temkin, B., “Multiscale Approach for the Network Compression-Friendly Ordering”, Journal of Discrete Algorithms, vol. 9, no. 2, 2011.

V. M. Zavalaand Robbins, B. A., “Convergence Analysis of a Parallel Newton Scheme for Dynamic Power Grid Simulations”, in Proc. 1st International Workshop on High Performance Computing, Networking and Analytics for the Power Grid, 2011.

S. M. Aithaland Upadhyay, D., “Feasibility Study of the Potential Use of Chemistry Based Emission Predictions for Real-Time Control of Modern Diesel Engines”, Applied Energy, vol. 91, no. 1, pp. 475-482, 2011.

V. M. Zavala, Thomas, C., Zimmerman, M., and Ott, A., “Next-Generation Building Energy Management Systems and Implications for Electricity Markets”, 2011.

J. Bresnahan, Freeman, T., LaBissoniere, D., and Keahey, K., “Managing Appliance Launches in Infrastructure Clouds”, in Proc. TeraGrid '11, Salt Lake City, Utah, 2011.

H. Youand Wang, B., “Life Cycle Optimization of Biomass-to-Liquids Supply Chains with Distributed-Centralized Processing Networks”, Ind. Eng. Chem. res., vol. 50, no. 17, pp. 10101-10127, 2011.

P. Balaprakash, Wild, S. M., and Norris, B., “SPAPT: Search Problems in Automatic Performance Tuning”, presented at the 04/2011, 2011.

N. Schunck, Baran, A., Kortelainen, M., McDonnell, J., and More', J. J., “Computing Heavy Elements”, in Proc. SciDAC Conference 2011, Denver, CO, 2011.

P. H. Carns, Harms, K., Allcock, W. E., Bacon, C., Lang, S., Latham, R., and Ross, R. B., “Storage Access Characteristics of Computational Science Applications”, in Mass Storage Systems and Technologies ()MSST), 2011.

V. Vishwanath, Hereld, M., Morozov, V., and Papka, M. E., “Topology-Aware Data Movement and Staging for I/O Acceleration on Blue Gene/P Supercomputing Systems.”, in Proc. 2011 International Conference for High Performance Computing, Networking, Storage and Analysis, Seattle, Washington, 2011.

J. A. Gilbertand Meyer, F., “Modeling The Earth's Microbiome, A Real World Deliverable for Microbial Ecology”, Microbe Magazine, 2011.

W. Tantisiriroj, Patil, S., Gibson, G., Son, S. W., Lang, S., and Ross, R. B., “On the Duality of Data-intensive File System Design: Reconciling HDFS and PVFS”, in Proc. SciDAC 2011 Conference, Denver, CO, 2011.

D. Negrut, Tasora, A., Anitescu, M., Mazhar, H., Heyn, T., and Pazouki, A., “Solving Large Multibody Dynamics Problems on the GPU”, in GPU Computing Gems JAde Edition, Morgan Kaufmann, 2011.

D. Goodell, Gropp, W. D., Zhao, X., and Thakur, R., “Scalable Memory Use in MPI: A Case Study with MPICH2”, in EuroMPI'11 Proc. 18th Wuropean MPI Users' Group conference on Recent advances in the Message Passing Interface, 2011.

S. O'Brien, Glass, E. M., Brulc, J. M., Gilbert, J. A., Antonopoulos, D. A., and Meyer, F., “Meeting Report: The 2nd Annual Argonne Soils Workshop, Argonne National Laboratory, Chicago USA, October 6-8, 2010”, Standards in Genomic Sciences, vol. 5, no. 2, pp. 198-202, 2011.

K. Yoshii, Naik, H., Yu, C., and Beckman, P. H., “Extending and Benchmarking the "Big Memory" implementation on Blue Gene/P Linux”, in Proc. 1st International Workshop on Runtime and Operating Systems for Supercomputers (ROSS'11), Venice, Italy, 2011.

J. R. Hammond, Dinan, J., Balaji, P., Kabadshow, I., Potluri, S., and Tipparaju, V., “OSPRI: An Optimized One-Sided Communication Runtime for Leadership-Class Machines”, in The 6th Conference on Partitioned Global Address Space Programming Models, Santa Barbara, CA, 2011.

A. Wilke, Wilkening, J., Glass, E. M., Desai, N. L., and Meyer, F., “Porting the MG-RAST Metagenomic Data Analysis Pipeline to the Cloud”, Concurrency and Computation: Practice and Experience, vol. 23, no. 17, pp. 2250-2257, 2011.

J. J. More'and Wild, S. M., “Estimating Computational Noise”, SIAM J. Sci. Comput., vol. 33, no. 3, pp. 1291-1314, 2011.

Z. Insepov, Ivanov, V., Jokela, S., and Wetstein, M., “Comparison of Back-Scattering Properties of Electron Emission Materials”, in Proceedings of 2011 Particle Accelerator Conference, New York, NY, USA, 2011.

M. Lubin, Petra, C. G., Anitescu, M., and Zavala, V. M., “Scalable Stochastic Optimization of Complex Energy Systems”, in SC'11 Proc. of 2011 International Conference for High Performance Computing, Networking, Storage and Analysis, Seattle, Washington, 2011.

J. M. Wozniakand Wilde, M., “JETS: Language and System Support for Many Parallel Task Computing”, in Proc. 40th International Conf. on Parallel Processing Workshops, 2011.

P. E. Larsen, Collart, F. R., Field, D., Meyer, F., Keegan, K. P., Henry, C. S., McGrath, J., Quinn, J., and Gilbert, J. A., “Predicted Relative Metabolomic Turnover (PRMT): Determining Metabolic Turnover from a Coastal Marine Metagenomic Dataset”, Microbial Informatics and Experimentation, vol. 1, no. 1, p. 4, 2011.

M. S. Minand Fischer, P. F., “Performance Analysis on the IBM Blue Gene/P for Wakefield Calculations”, in Proceedings of 2011 Particle Accelerator Conference, New York, NY, USA, 2011.

P. H. Carns, Harms, K., Allcock, W. E., Bacon, C., Lang, S., Latham, R., and Ross, R. B., “Understanding and Improving Computational Science Storage Access through Continuous Characterization”, in Proc. 2011 IEEE 27th Symposium on Mass Storage Systems and Technologies (MSST), 2011.

L. Ramakrishnan, Campbell, S., Canon, R. S., Declerck, T., Sakrejda, I., Coghlan, S. M., Zbiegiel, P. T., Bradshaw, R., Desai, N. L., and Liu, A., “Magellan: Experiences from a Science Cloud”, in Proc. ScienceCloud2011, San Jose, CA, 2011.

B. Nicolae, Bresnahan, J., and Keahey, K., “Going Back and Forth: Efficient Multideployment and Multisnapshotting on Clouds”, in Proc. 20th Internatinoal Symposium on High Performance Distributed Computing (HPDC'11), San Jose, CA, 2011.

J. Chenand Burer, S., “Globally Solving Nonconvex QPs via Completely Positive Programming”, Mathematical Programming Computation, vol. 4, pp. 33-52, 2011.

J. Chen, “A Deflated Version of the Block Conjugate Gradient Algorithm with an Application to Gaussian Process Maximum Likelihood Estimation”, 2011.

M. Anitescuand Petra, C. G., “Higher-Order Confidence Intervals for Stochastic Programming Using Bootstrapping”, 2011.

S. W. Son, Lang, S., Latham, R., Ross, R. B., and Thakur, R., “Reliable MPI-IO through Layout-Aware Replication”, in Proc. 7th IEEE Int'l Workshop on Storage Network Architecture and Parallel I/O (SNAPI 2011), Denver, CO, 2011.

A. P. Craig, Vertenstein, M., and Jacob, R. L., “A New Flexible Coupler for Earth System Modeling Developed for CCSM4 and CESM1”, International Journal of High Performance Computing Applications, vol. 25, no. 4, 2011.

B. Welton, Kimpe, D., Cope, J., Patrick, C. M., Iskra, K., and Ross, R. B., “Improving I/O Forwarding Throughput with Data Compression”, in Proc. 2011 IEEEE International Conference on Cluster Computing (CLUSTER), Austin, Texas, 2011.

C. Muelder, Sigovan, C., Ma, K. - L., Cope, J., Lang, S., Iskra, K., Beckman, P. H., and Ross, R. B., “Visual Analysis of I/O System Behavior for High-End Computing”, in LSAP'11, San Jose, CA, 2011.

I. T. Foster, “Accelerating and Democratizing Science through Cloud-Based Services”, Internet Computing, vol. 15, no. 3, pp. 70-73, 2011.

S. M. Aithal, “Equilibrium Chemistry Calculations for Assessment of NOx Abatement Strategies in IC Engines”, in Proc. ASME 2011 Internal Combustion Engine Division Fall Technical Conference, Morgantown, West Virginia, 2011.

R. Kettimuthu, Link, S., Bresnahan, J., Link, M., and Foster, I. T., “Globus XIO Pipe Open Driver: Enabling GridFTP to Leverage Standard Unix Tools”, in Proc. TeraGrid 2011, Austin, Texas, 2011.

L. Wang, Lee, J., Anitescu, M., A. Azab, E., McInnes, L. Curfman, Munson, T. S., and Smith, B. F., “A Differential Variational Inequality Approach for the Simulation of Heterogeneous Materials”, in Proc. SciDAC2011 Conference, Denver, CO, 2011.

B. Allen, Bresnahan, J., Childers, L., Foster, I. T., Kandaswamy, G., Kettimuthu, R., Kordas, J., Link, M., Martin, S., Pickett, K., and Tuecke, S., “Globus Online: Radical Simplification of Data Movement via SasS”, 2011.

R. Ranjan, Pantano, C., and Fischer, P. F., “Direct Simulation of Turbulent Heat Transfer in Swept Flow over a Wire in a Channel”, International J. of Heat and Mass Transfer, vol. 54, no. 21, pp. 4636-4654, 2011.

Z. Meglicki, Norris, B., and Gray, S. K., “Computations on Arbitrary Surfaces in FDTD Space”, 2011.

G. Belter, Jessup, E., Karlin, I., Nelson, T., Norris, B., and Siek, J. G., “Exploring the Optimization Space for Build to Order Matrix Algebra”, presented at the 05/2011, 2011.

V. M. Zavala, Skow, D., Celinski, T., and Dickens, P. M., “Techno-Economic Evaluation of a Next-Generation Building Energy Management System”, 2011.

M. Lubin, Petra, C. G., and Anitescu, M., “The Parallel Solution of Dense Saddle-Point Linear Systems Arising in Stochastic Programming”, Optimization Methods and Software, 2011.

S. Kumar, Vishwanath, V., Carns, P. H., Summa, B., Scorzelli, G., Pascucci, V., Ross, R. B., Chen, J., Kolla, H., and Grout, R., “PIDX: Efficient Parallel I/O for Multi-Resolution Multi-Dimensional Scientific Datasets”, in Proc. 2011 IEEEE International Conference on Cluster Computing (CLUSTER), Austin, Texas, 2011.

R. Latham, Daley, C., Liao, W. - K., Gao, K., Ross, R. B., Dubey, A., and Choudhary, A., “A Case Study for Scientific I/O: Improving the FLASH Astrophysics Code”, A case study for scientific I/O: improving the FLASH astrophysics code, vol. 5, 2011.

S. B. Darling, You, F., Veselka, T., and Velosa, A., “Assumptions and the Levelized Cost of Energy for Photovoltaics”, Energy and Environmental Science, 2011.

T. Peterka, Ross, R. B., Nouanesengsy, B., Lee, T. - Y., Shen, H. - W., Kendall, W., and Huang, J., “A Study of Parallel Particle Tracing for Steady-STate and Time-Varying Flow Fields”, in Proceedings of Parallel & Distributed Processing Symposium, Anchorage, 2011.

P. Marshall, Keahey, K., and Freeman, T., “Improving Utilization of Infrastucture Clouds”, in Proc. 11th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing, Newport Beach, CA, 2011.

V. M. Zavala, “Proactive Energy Management for High-Performance Buildings: Exploiting and Motivating New Sensor Technologies”, presented at the 09/2011, 2011.

J. Dinan, Krishnamoorthy, S., Balaji, P., Hammond, J. R., Krishnan, M., Tipparaju, V., and Vishnu, A., “Noncollective Communicator Creation in MPI”, in EuroMPI'11 Proc. 18th Wuropean MPI Users' Group conference on Recent advances in the Message Passing Interface, 2011.

F. Meyerand Kyrpides, N., “Proposal for Open Discussion: Informatics Challenges for Next Generation Sequencing Metagenomics Experiments”, in Bioinformatics, 2011.

I. Morozov, Norman, G. E., Insepov, Z., and Norem, J., “Sheath Parameters for Non-Debye Plasmas: Simulations and Arc Damage”, 2011.

M. Hereld, Insley, J. A., Olson, E., Papka, M. E., Vishwanath, V., Norman, M. L., and Wagner, R., “Exploring Large Data over Wide Area Networks”, in Proc. IEEE Symposium on Large-Scale Data Analysis and Visualization (LDAV2011), Providence, RI, 2011.

S. Abhyankar, Smith, B. F., Zhang, H., and Flueck, A. J., “Using PETSc to Develop Scalable Applications for Next-Generation Power Grid”, in HiPCNA-PG '11, New York, NY, USA, 2011.

F. M. Hoffman, Larson, J. W., Mills, R. T., Brooks, B. J., Ganguly, A. R., Hargrove, W. W., Huang, J., Kumar, J., and Vatsavai, R. R., “Data Mining in Earth System Science (DMESS 2011)”, Procedia Computer Science, vol. 4, pp. 1450-1455, 2011.

J. W. Lottes, “Independent Quality Measures for Symmetric Algebraic Multigrid Components”, 2011.

J. M. Wozniak, Bremer, P., Chatterjee, S., Thain, D., Striegel, A., and Izaguirre, J., “GEMS: User Control for Cooperative Scientific Repositories”, in Computational and Data Grids: Principles, Applicaitons and Design, IGI Global, 2011.

Z. Insepov, Kuksin, A. Y., Rest, J., Starikov, S. V., Yacout, A. M., Yanilkin, A. V., Ye, B., and Yun, D., “Simulation of Ion Implantation into Nuclear Materials and Comparison with Experiment”, in Proc. Application of Accelerators in Research and Industry, 2011.

Y. V. Peetand Fischer, P. F., “Legendre Spectral Element Method with Nearly Incompressible Materials”, 2011.

J. Chenand Burer, S., “A First-Order Smoothing Technique for a Class of Large-Scale Linear Programs”, 2011.

Y. Liu, Rong, X., Liu, Z., Wu, S., Zhang, S., and Jacob, R. L., “A Random Subgrouping Scheme for Ensemble Based Filter (sEnSRF)”, 2011.

J. Elliott, Foster, I. T., Loudermilk, M., and Munson, T. S., “Impact of Eliminating Biofuels Production on US Gasoline Prices: An Equilibrium Analysis”, 2011.

A. Kannanand Wild, S. M., “Obtaining Quadratic Models of Noisy Functions”, 2011.

P. Balaji, Gupta, R., Vishnu, A., and Beckman, P. H., “Mapping Communication Layouts to Network Hardware Characteristics on Massive-Scale Blue Gene Systems”, in Computer Science - Research and Development, 2011.

D. Smirnova, Insepov, Z., Rest, J., Yacout, A. M., Starikov, S. V., Kuksin, A. Y., Stegailov, V. V., and Norman, G. E., “Developing a New Interatomic Potential for U-Mo-Xe by Using an Ab Initio Force-Matching Method”, 2011.

M. V. Stoitsov, Nam, H., Nazarewicz, W., Bulgac, A., Hagen, G., Kortelainen, M., Peil, J. C., Roche, K. J., Schunck, N., Thompson, I., Vary, J. P., and Wild, S. M., “UNEDF: Advanced Scientific Computing Transforms the Low-Energy Nuclear Many-Body Problem”, in Proc. SciDAC 2011 Conference, Denver, CO, 2011.

M. Kortelainen, McDonnell, J., Nazarewicz, W., Reinhard, P. - G., Sarich, J., Schunck, N., Stoitsov, M. V., and Wild, S. M., “Nuclear Energy Density Optimization: Large Deformations”, Phys. Rev. C, vol. 85, no. 2, p. 024304, 2011.

I. T. Foster, Boverhof, J., Chervenak, A. L., Childers, L., DeSchoen, A., Garzoglio, G., Gunter, D., Holzman, B., Kandaswamy, G., Kettimuthu, R., Kordas, J., Livny, M., Martin, S., Mhashilkar, P., Miller, Z., Samak, T., Su, M. - H., Tuecke, S., Venkataswamy, V., Ward, C., and Weiss, C., “Reliable High-Performance Data Transfer via Globus Online”, presented at the 06/2011, 2011.

E. Ng, Sarich, J., Wild, S. M., Munson, T. S., Aktulga, H. M., Yang, C., Maris, P., Vary, J. P., Kortelainen, M., Nazarewicz, W., Papenbrock, T., Schunck, N., Stoitsov, M. V., and Bertolli, M., “Advancing Nuclear Physics Through TOPS Solvers and Tools”, in SciDAC 2011 Conference, Denver, CO, 2011.

Z. Insepov, Rest, J., and Yacout, A. M., “Derivation of Kinetic Coefficients by Atomistic Methods for Studying Defect Behavior in Mo”, in Journal of Nuclear Materials, 2011.

J. Cope, Iskra, K., Kimpe, D., and Ross, R. B., “Portable and Scalable MPI Shared File Pointers”, in EuroMPI'11 Proc. 18th Wuropean MPI Users' Group conference on Recent advances in the Message Passing Interface, 2011.

J. A. Insley, Grinberg, L., and Papka, M. E., “Visualizing Multiscale, Multiphysics Simulation Data: Brain Blood Flow”, in Proc. VisWeek 2011, Providence, RI, 2011.

M. Hereld, Papka, M. E., and Vishwanath, V., “Toward Simulation-Time Data Analysis and I/O Acceleration on Leadership-Class Systems”, in Proc. IEEE Symposium on Large-Scale Data Analysis and Visualization (LDAV2011), Providence, RI, 2011.

K. P. Keegan, Trimble, W. L., Wilkening, J., Wilke, A., Harrison, T., D'Souza, M., and Meyer, F., “Platform-Indepedent Method for Detecting Errors in Metagenomic Sequencing Data: DRISEE”, 2011.

A. V. Obabko, Fischer, P. F., Tautges, T. J., Karabasov, S., Goloviznin, V. M., Zaytsev, M. A., Chudanov, V. V., Pervichkno, V. A., and Aksenova, A. E., “CFD VAlidation in OECD/NEA T-Junction Benchmark”, 2011.

V. M. Zavala, “Real-Time Optimization Strategies for Building Systems”, 2011.

D. Buntinas, “Scalable Distributed Consensus to Support MPI Fault Tolerances”, 2011.

W. Tang, Desai, N. L., Vishwanath, V., Buettner, D., and Lan, Z., “Job Coscheduling on Coupled High-End Computing Systems”, in Proc. 40th International Conference on Parallel Processing Workshops, 2011.

V. M. Zavala, “Stability of Multiobjective Predictive Control: An Utopia-Tracking Approach”, Automatica, 2011.

A. Duggleby, Camp, J. L., Doron, Y., and Fischer, P. F., “Massively Parallel Computational Fluid Dynamics with Large Eddy Simulation in Complex Geometries”, presented at the 08/2011, 2011.

M. G. Rodriguez, Uriarte, L. E. Ortiz, Jia, Y., Yoshii, K., Ross, R. B., and Beckman, P. H., “Wireless Sensor Network for Data-Center Environmental Monitoring”, in Conference Publications, Palmerston North, 2011.

N. Liu, Carothers, C. D., Cope, J., Carns, P. H., Ross, R. B., Crume, A., and Maltzahn, C., “Supercomputer Storage System Models for the Age of Exascale Computing”, in Proc. 9th International Conf. on Parallel Processing and Applied Mathematics, Poland, 2011.

J. M. Wozniak, Maheshwari, K., Zhang, Z., Munson, T. S., Foster, I. T., Katz, D., Lusk, E. L., Ripeanu, M., and Wilde, M., “Parallel Evaluation of Dataflow Programs for Extreme-Scale Many-Task Computing”, presented at the 09/2011, 2011.

Z. Zhang, Katz, D. S., Ripeanu, M., Wilde, M., and Foster, I. T., “AME: An Anyscale Many-Task Computing Engine”, in Proceedings of the 6th Workshop on Workflows in Support of Large-Scale Science, Seattle, Washington, 2011.

T. Thomas, Gilbert, J. A., and Meyer, F., “Making the Most Out of Metagenomics - A Guide from Sampling to Data Analysis”, Microbial Informatics and Experimentation, 2011.

A. Knoll, Liu, B., Lau, K. C., Chan, M. K. Y., Sumer, A., Greeley, J., Curtiss, L., Jellinek, J., Hereld, M., and Papka, M. E., “Uncertainty Classification of Molecular Interfaces”, in Proc. Workshop on Uncertainty Quantification, IEEE VisWeek, Providence, RI, 2011.