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Reference | Publication | Mathematics and Computer Science Division

MCS 2015 Publications

2015

T. Bosse, “Multigrid Method for Nonsmooth Problems”, 2015.

“Using MPI in High-Performance Computing Services”, 2015.

W. Xuand Anitescu, M., “A Limited Memory Multiple Shooting Method for Weakly Constrained Variational Data Assimilation”, 2015.

M. Si, Pena, A. J., Hammond, J., Balaji, P., and Ishikawa, Y., “Scaling NWChem with Efficient and Portable Asychronous Communication in MPI RMA”, in CCGrid 2015, Shenzhen, 2015.

M. Dorier, Wozniak, J. M., Dreher, M., Antoniu, G., Peterka, T., and Raffin, B., “Lessons Learned from Building In Situ Coupling Frameworks”, in ISAV2015, Austin, Texas, 2015.

A. Castello, Mayo, R., Quintana-Orti, E. S., Pena, A. J., and Balaji, P., “Exploring the Suitability of Remote GPGPU Virtualization for the OpenACC Programming Model using rCUDA”, in IEEE Cluster 2015, Chicago, IL, 2015.

B. Behzad, Byna, S., Wild, S. M., Prabhat, A., and Snir, M., “Dynamic Model-driven Parallel I/O Performance Tuning”, in IEEE Cluster 2015, Chicago, IL, 2015.

K. Raffenetti, Pena, A. J., and Balaji, P., “Toward Implementing Robust Support for Portals 4 Networks in MPICH”, in CCGrid 2015, 2015.

K. Kimand Zavala, V. M., “Algorithmic Innovations and Software for the Dual Decomposition Method Applied to Stochastic Mixed-Integer Programs”, Mathematical Programming Computation, 2015.

L. Bautista-Gomez, Gainaru, A., Perarnau, S., Tiwari, D., Gupta, S., Engelmann, C., Cappello, F., and Snir, M., “Reducing Waste in Large Scale Systems through Introspective Analysis”, in IPDPS 2016, Chicago, IL, 2015.

R. B. Gramacy, Gray, G. A., Le Digabel, S., Lee, H. K. H., Ranjan, P., Wells, G., and Wild, S. M., “Rejoinder: Modeling an Augmented Lagrangian for Blackbox Constrained Optimization”, Technometrics, vol. 58, no. 1, pp. 26-29, 2015.

A. Ulvestad, Tripathi, A., Hruszkewycz, S. O., Cha, W., Fuoss, P. H., Wild, S. M., and Stephenson, G. B., “Chrono-CDI: Coherent diffractive imaging of time-evolving samples”, 2015.

R. Mak, Wild, S. M., and Jacobsen, C., “Non-Negative Matrix Analysis in X-Ray Spectromicroscopy: Choosing Regualizers”, AIP Conference Proceedings, vol. 1696, p. 020034, 2015.

J. A. Zounmevo, Perarnau, S., Iskra, K., Yoshii, K., Gioiosa, R., Van Essen, B. C., Gokhale, M. B., and Leon, E. A., “A Container-Based Approach to OS Specialization for Exascale Computing”, in First Workship on Containers 2015 (WoC), 2015.

Z. Di, Leyffer, S., and Wild, S. M., “Optimization-Based Approach for Joint X-ray Fluorescence and Transmission Tomographic Inversion”, SIAM Journal on Imaging Science, vol. 9, pp. 1-23, 2015.

P. Balaprakash, Tiwari, A., Wild, S. M., Carrington, L., and Hovland, P. D., “AutoMOMML: Automatic Multi-Objective Modeling with Machine Learning”, 2015.

A. Brooks, Dang, H., Dryden, N., and Snir, M., “PPL: An Abstract Runtime System for Hybrid Parallel Programming”, in ESPM'15, Austin, Texas, 2015.

W. Bland, Lu, H., Seo, S., and Balaji, P., “Lessons Learned Implementing User-Level Failure Mitigation in MPICH”, in CCGrid 2015, 2015.

E. Jungand Kettimuthu, R., “High-Performance Serverless Data Transfer over Wide-Area Networks”, in Parallel and Distributed Processing Symposium Workshop (IPDPSW), Hyderabad, 2015.

X. Zhao, Conley, R., Ray, N., Mahadevan, V. S., and Jiao, X., “Conformal and Non-conformal Adaptive Mesh Refinement with Hierarchical Array-based Half-Facet Data Structures”, Procedia Engineering, vol. 124, pp. 304-316, 2015.

R. Madduri, Chard, K., Chard, R., Lacinski, L., Rodriguez, A., Sulakhe, D., Kelly, D., Dave, U., and Foster, I., “The Globus Galaxies Platform: Delivering Science Gateways as a Service”, Concurrency and Computation: Practice and Experience, vol. 27, no. 16, pp. 4344-4360, 2015.

K. Kimand Zavala, V. M., “Large-Scale Stochastic Mixed-Integer Programming Algorithms for Power Generation Scheduling”, 2015.

B. Behzad, Prabhat, A., and Snir, M., “Pattern-driven Parallel I/O Tuning”, in PDSW'15, Austin, Texas, 2015.

A. A. Chien, Balaji, P., Beckman, P. H., Dun, N., Fang, A., Fujita, H., Iskra, K., Rubenstein, Z., Zheng, Z., Schreiber, R., Hammond, J., Dinan, J., Laguna, I., Richards, D., Dubey, A., van Straalen, B., Hoemmen, M., Heroux, M., Teranishi, K., and Siegel, A. R., “Versioned Distributed Arrays for Resilience in Scientific Applications: Global View Resilience”, Procedia Computer Science, vol. 51, pp. 29-38, 2015.

D. C., C., L., Wozny, G., Flores-Tlacuahuac, A., Vasquez-Medrano, R., and Zavala, V. M., “A Computational Framework for Identifiability and Ill-Conditioning Analysis of Lithium-Ion Battery Models”, 2015.

N. Ray, Grindeanu, I., Zhao, X., Mahadevan, V., and Jiao, X., “Array-Based Hierarchical Mesh Generation in Parallel”, Procedia Engineering, vol. 124, pp. 291-303, 2015.

F. Isaila, Balaprakash, P., Wild, S. M., Kimpe, D., Latham, R., Ross, R., and Hovland, P. D., “Collective I/O Tuning Using Analytical and Machine-Learning Models”, in IEEE Cluster 2015, Chicago, IL, 2015.

A. J. Pena, Bland, W., and Balaji, P., “VOCL-FT: Introducing Techniques for Efficient Soft Error Coprocessor Recovery”, in SC'15, Austin, Texas, 2015.

V. M. Zavala, “Managing Conflicts Among Decision-Makers in Multi-Objective Design and Operations”, in 2015 AIChE Annual Meeting, Salt Lake City, UT, 2015.

K. Kulshreshtha, Narayanan, S. H. K., and Albring, T., “A Mixed Approach to Adjoint Computation with Algorithmic Differentiation”, 2015.

A. Amer, Lu, H., Balaji, P., and Matsuoka, S., “Characterizing MPI and Hybrid MPI+Threads Application at Scale: Case Study with BFS”, in CCGrid 2015, Shenzhen, 2015.

J. Bischof, Wilke, A., Gerlach, W., Harrison, T., Paczian, T., Tang, W., Wilkening, J., Desai, N., and Meyer, F., “Shock: Active Storage for Multicloud Streaming Data Analysis”, in 2nd International Symposium on Big Data Computing (BDC), Limassol, 2015.

S. M. Aithaland Wild, S. M., “Development of a Reduced-Order Design/Optimization Tool for Automotive Engines Using Massively Parallel Computing”, in 12th International Conference on Engines and Vehicles, 2015.

J. Bessac, Ailliot, P., Cattiaux, J., and Monbet, V., “Comparison of Hidden and Observed Regime-Switching Autoregressive Models for (u,v)-Components of Wind Fields in the Northeast Atlantic”, Advances in Statistical Climatology, Meteorolgy and Oceanolgraphy, vol. 2, pp. 1-16, 2015.

T. Bicer, Gursoy, D., Kettimuthu, R., De Carlo, F., Agrawal, G., and Foster, I. T., “Rapid Tomographic Image Reconstruction via Large-Scale Parallelization”, in Euro-Par 2015, 2015.

F. Lin, Leyffer, S., and Munson, T., “A Two-Level Approach to Large Mixed-Integer Programs with Application to CoGeneration in Energy-Efficient Buildings”, Computational Optimization and Applications, pp. 1-46, 2015.

“Uncertainty Quantification for Nuclear Density Functional Theory and Information Content of New Measurements”, 2015.

R. G. Regisand Wild, S. M., “CONORBIT: Constrained Optimization by Radial Basis Function Interpolation in Trust Regions”, 2015.

K. Zhang, Ogrenci-Memik, S., Memik, G., Yoshii, K., Sankaran, R., and Beckman, P. H., “Minimizing Thermal Variation Across System Components”, in IEEE International Parallel and Distributed Processing Symposium, 2015.

H. Lu, Seo, S., and Balaji, P., “MPI+ULT: Overlapping Communication and Computation with User-Level Threads”, in HPCC'15, New York, 2015.

M. Schanen, Marin, O., Zhang, H., and Anitescu, M., “Asynchronous Two-Level Checkpointing Scheme for Large-Scale Adjoints in the Spectral-Element Solver Nek5000”, Procedia Computer Science, vol. 80, pp. 1147-1158, 2015.

F. Isaila, Carretero, J., and Ross, R., “CLARISSE: a middleware for data staging coordination and control on large-scale HPC platforms”, 2015.

O. Yildiz, Dorier, M., Ibrahim, S., Ross, R., and Antoniu, G., “On the Root Causes of Cross-Application I/O Interference in HPC Storage Systems”, in IPDPS 2016, Chicago, IL, 2015.

“Rapid Tomographic Image Reconstruction via Large-Scale Parallelization”, in Euro-Par 2015, Vienna, 2015.

T. Peterka, Croubois, H., Li, N., Rangel, S., and Cappello, F., “Self-Adaptive Density Estimation of Particle Data”, SIAM Journal on Scientific Computing, 2015.

A. Moawad, Balaprakash, P., Rousseau, A., and Wild, S. M., “Novel Large Scale Simulation Process to Support DOT's CAFE Modeling System”, in International Electric Vehicle Symposium and Exhibition, Korea, 2015.

S. Le Digabeland Wild, S. M., “A Taxonomy of Constraints in Simulation-Based Optimization”, 2015.

M. Otten, Shah, R. A., Scherer, N. F., Min, M. S., Pelton, M., and Gray, S. K., “Entanglement of Two, Three and Four Plasmonically Coupled Quantum Dots”, Physical Review B, vol. 92, no. 12-15, 2015.

H. Fujita, Iskra, K., Balaji, P., and Chien, A. A., “Versioning Architectures for Local and Global Memory”, in Proc. 21st IEEE International Conference on Parallel and Distributed Systems (ICPADS), Melbourne, VIC , 2015.

H. Guo, Phillips, C. L., Peterka, T., Karpeyev, D., and Glatz, A., “Extracting, Tracking and Visualizing Vortices in 3D Complex-Valued Superconductor Simulation Data”, IEEE Transactions of Visualization and Computer Graphics, vol. 22, no. 1, 2015.

S. Diand Cappello, F., “Fast Error-bounded Lossy HPC Data Compression with SZ”, in IPDPS 2016, Chicago, IL, 2015.

M. Si, Balaji, P., and Ishikawa, Y., “Techniques for Enabling Highly Efficient Message Passing on Many-Core Architectures”, in CCGrid 2015, 2015.

S. Perarnau, Thakur, R., Iskra, K., Raffenetti, K., Cappello, F., Gupta, R., Beckman, P. H., Snir, M., Hoffman, H., Schulz, M., and Rountree, B., “Distributed Monitoring and Management of Exascale Systems in Argo Project”, in Distributed Applications and Interoperable Systems, vol. 9038, Springer, 2015.

A. J. Penaand Balaji, P., “Understanding Data Access Patterns Using Object-Differentiated Memory Profiling”, in CCGrid 2015, Shenzhen, 2015.

A. M. Aji, Pena, A. J., Balaji, P., and Feng, W., “Automatic Command Queue Scheduling for Task-Parallel Workloads in OpenCL”, in IEEE International Conference on Cluster Computing, Chicago, IL, 2015.

S. Diand Cappello, F., “Adaptive Impact-Driven Detection of Silent Data Corruption for HPC Applications”, IEEE Transactions on Parallel and Distributed Systems, 2015.

H. Guo, He, W., Peterka, T., and Shen, H., “Finite-Time Lyapunov Exponents and Lagrangian Coherent Structures in Uncertain Unsteady Flows”, IEEE Transactions of Visualization and Computer Graphics, 2015.

M. Otten, Gong, J., Mametjanov, A., Vose, A., Levesque, J., Fischer, P., and Min, M., “An MPI/OpenACC Implementation of a High Order Electromagnetics Solver with GPUDirect Communication”, International Journal of High Performance Computing Applications, pp. 1-15, 2015.

A. V. Obabko, Fischer, P. F., Marin, O., Merzari, E., and Pointer, D., “Verification and Validation of Nek5000 for T-Junction, Matis, SIBERIA, and Max Experiments”, 2015.

Z. Zhou, Yang, X., Lan, Z., Rich, P., Tang, W., Morozov, V., and Desai, N., “Improving Batch Scheduling on Blue Gene/Q by Relaxing 5D Torus Network Allocation Constraints”, in IPDPS, 2015.

H. Gangammanavar, Sen, S., and Zavala, V. M., “Stochastic Optimization of Sub-hourly Economic Dispatch with Wind Energy”, IEEE Transactions on Power Systems, 2015.

G. Gunow, Tramm, J. R., Forget, B., and Smith, K., “SimpleMOC - A Performance Abstraction for 3D MOC”, in ANS MC2015, 2015.

R. Jainand Mahadevan, V., “Simplifying Workflow for Reactor Assembly and Full Core Modeling”, in ANS MC2015, Nashville, TN, 2015.

W. Gerlach, Tang, W., and Wilke, A., “Container Orchestration for Scientific Workflows”, in 2015 IEEE International Conference on Cloud Engineering, 2015.

N. Chiangand Zavala, V. M., “Emerging Optimal Control Models and Solver for Interconnected Natural Gas and Electricity Networks”, 2015.

S. Seo, Latham, R., Zhang, J., and Balaji, P., “Implementation and Evaluation of MPI Nonblocking Collective I/O”, in CCGrid 2015, 2015.

D. Boda, Leaf, G., Fonseca, J., and Eisenberg, B., “Energetics of Ion Competition in the DEKA Selectivity Filter of Neuronal Sodium Channels”, Condens. Matter. Phys., vol. 18, no. 1, 2015.

S. M. Aithaland Wild, S. M., “ACCOLADES: A Scalable Workflow Framework for Large-Scale Simulation and Analyses of Automotive Engines”, in ISC: High Performance 2015, 2015.

V. M. Zavala, “Bridging the Gap Between Multigrid, Hierarchical, and Receding-Horizon Control”, in 2015 AIChE Annual Meeting, Salt Lake City, UT, 2015.

N. Schunck, McDonnell, J. D., Higdon, D., Sarich, J., and Wild, S. M., “Uncertainity Quantification and Propagation in Nuclear Density Functional Theory”, Nuclear Data Sheets, vol. 123, pp. 115-118, 2015.

M. Engel, Damasceno, P. F., Phillips, C. L., and Glotzer, S. C., “Computational Self-Assembly of a One-Component Icosahedral Quasicrystal”, Nature Materials, vol. 14, pp. 109-116, 2015.

D. Higdon, McDonnell, J. D., Schunck, N., Sarich, J., and Wild, S. M., “A Bayesian Approach for Parameter Estimation and Prediction using a Computationally Intensive Model”, Journal of Physics G: Nuclear and Particle Physics, vol. 42, no. 3, p. 034009, 2015.

J. Sarich, Schunck, N., and Wild, S. M., “Derivative-free Optimization for Parameter Estimation in Computational Nuclear Physics”, Journal of Physics G: Nuclear and Particle Physics, vol. 42, no. 3, p. 034031, 2015.

A. Ekstrom, Carlsson, B. D., Wendt, K. A., Forssen, C., Hjorth-Jensen, M., Machleidt, R., and Wild, S. M., “Statistical Uncertainties of a Chiral Interaction at Next-to-Next-To Leading Order”, Journal of Physics G: Nuclear and Particle Physics, vol. 42, p. 034003, 2015.

S. S. Patel, Min, M., Uga, K. C., and Lee, T., “A Spectral Element Discontinuous Galerkin Thermal Lattice Boltzmann Method for Conjugate Heat Transfer Applications”, 2015.

T. Nelson, Rivera, A., Balaprakash, P., Hall, M., Hovland, P. D., Jessup, E., and Norris, B., “Generating Efficient Tensor Contractions for GPUs”, 2015.

A. Tripathi, Leyffer, S., Munson, T., and Wild, S. M., “Visualizing and Improving the Robustness of Phase Retrieval Algorithms”, Procedia Computer Science, vol. 51, pp. 815–824, 2015.

A. Sasidharanand Snir, M., “Space-filling Curves for Partitioning Adaptively Refined Meshes”, 2015.

F. Linand Leyffer, S., “Oscillation Mitigation in Electric Power Grids via Semidefinite Programming”, 2015.

F. Cappello, Constantinescu, E. M., Hovland, P. D., Peterka, T., Phillips, C. L., Snir, M., and Wild, S. M., “Improving the Trust in Results of Numerical Simulations and Scientific Data Analytics”, 2015.

H. Dang, Brooks, A., Dryden, N., and Snir, M., “An Asynchronous Runtime System using RDMA and Lightweight Tasks”, 2015.

A. Amer, Lu, H., Wei, Y., Balaji, P., and Matsuoka, S., “MPI+Threads: Runtime Contention and Remedies”, in PPoPP 2015: Principles and Practice of Parallel Programming, San Francisco, CA, 2015.

N. Schunck, McDonnell, J. D., Sarich, J., Wild, S. M., and Higdon, D., “Error Analysis in Nuclear Density Functional Theory”, Journal of Physics G: Nuclear and Particle Physics, vol. 42, no. 3, p. 034024, 2015.

P. F. Fischer, Heisey, K., and Min, M., “Scaling Limits for PDE-Based Simulation”, in 22nd AIAA Computational Fluid Dynamics Conference, Dallas, Texas, 2015.

J. Kang, Chiang, N., Laird, C. D., and Zavala, V. M., “Nonlinear Programming Strategies on High-Performance Computers”, in IEEE Conference on Decision and Control, Osaka, Japan, 2015.

V. M. Zavala, “A Multiobjective Optimization Perspective on the Stability of Economic MPC”, in ADCHEM 2015, Whistler, British Columbia, Canada, 2015.

H. Gangammanavar, Sen, S., and Zavala, V. M., “Stochastic Optimization of Sub-Hourly Economic Dispatch with Wind Energy”, IEEE Transactions on Power Systems, pp. 1-11, 2015.

F. Luand Chen, C., “Optimal Load Shedding in Electric Grids”, 2015.

F. Lin, Di, Z., and Leyffer, S., “A Multiscale Approach to A Class of Semidefinite Programs”, 2015.

J. Larson, Menickelly, M., and Wild, S. M., “Manifold Sampling for L1 Nonconvex Optimization”, 2015.

A. Roy, Balaprakash, P., Hovland, P. D., and Wild, S. M., “Exploiting Performance Portability in Search Algorithms for Autotuning”, 2015.

C. G. Petraand Potra, F. A., “A Homogeneous Model for Monotone Mixed Horizontal Linear Complementarity Problems”, 2015.

F. M. Nunes, Lovell, A., Ross, A., Titus, L. J., Charity, R. J., Dickhoff, W. H., M. Mahzoon, H., Sarich, J., and Wild, S. M., “One-Nucleon Transfer Reactions and the Optical Potential”, 2015.

H. Fujita, Iskra, K., Balaji, P., and Chien, A. A., “Empirical Comparison of Three Versioning Architectures”, in IEEE Cluster 2015, Chicago, IL, 2015.

A. J. Penaand Balaji, P., “A Data-Oriented Profiler to Assist in Data Partitioning and Distribution for Heterogeneous Memory in HPC”, 2015.

K. A. Khan, “Relating Lexicographic Smoothness and Directed Subdifferentiabilty”, 2015.